This question has been answered by jasonabuck. See the first response.
Use Friendly Alias Path -------------- use_alias_path -------------- No
Setting this option to 'yes' will display the full path to the Resource if the Resource has an alias. For example, if a Resource with an alias called 'child' is located inside a container Resource with an alias called 'parent', then the full alias path to the Resource will be displayed as '/parent/child.html'.
# Links to Content with Service Disciplines
RewriteRule ^documents/(\w+)/(\w+)$ index.php?q=documents.html&DocumentTitle=$2&PageServiceDiscipline=$1 [L]
RewriteRule ^webinars/(\w+)/(\w+)$ index.php?q=documents.html&DocumentTitle=$2&PageServiceDiscipline=$1 [L]
RewriteRule ^conference-presentations/(\w+)/(\w+)$ index.php?q=documents.html&DocumentTitle=$2&PageServiceDiscipline=$1 [L]
# Links to Content Directly
RewriteRule ^documents/(\w+)$ index.php?q=documents.html&DocumentTitle=$1 [L]
RewriteRule ^webinars/(\w+)$ index.php?q=documents.html&DocumentTitle=$1 [L]
RewriteRule ^conference-presentations/(\w+)$ index.php?q=documents.html&DocumentTitle=$1 [L]
# Friendly URLs
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule ^([^/]+)$ /index.php?q=$1 [L,QSA,NC]
# RewriteRule ^([^/]+)$ /index.php?q=$1 [L,QSA]RewriteEngine On
RewriteBase /
# Links to Content with Service Disciplines
RewriteRule ^documents/(\w+)/(\w+)$ index.php?q=documents.html&DocumentTitle=$2&PageServiceDiscipline=$1 [L]
RewriteRule ^webinars/(\w+)/(\w+)$ index.php?q=documents.html&DocumentTitle=$2&PageServiceDiscipline=$1 [L]
RewriteRule ^conference-presentations/(\w+)/(\w+)$ index.php?q=documents.html&DocumentTitle=$2&PageServiceDiscipline=$1 [L]
# Links to Content Directly
RewriteRule ^documents/(\w+)$ index.php?q=documents.html&DocumentTitle=$1 [L]
RewriteRule ^webinars/(\w+)$ index.php?q=documents.html&DocumentTitle=$1 [L]
RewriteRule ^conference-presentations/(\w+)$ index.php?q=documents.html&DocumentTitle=$1 [L]
# The Friendly URLs part
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule ^(.*)$ index.php?q=$1 [L,QSA]
<a href="[[~12]]">Some Page</a>
<base href="[[!++site_url]]" />