I have a bunch of old chunks that I’m not using anymore (30+). Is there any issue with deleting them via phpMyAdmin, opposed to deleting them one-by-one in MODx?
I would not suggest this method, you may leave behind orphaned data in the db. Not exactly sure how they are stored, so someone on the coding team should be able to give you a definite answer.
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There shouldn’t be a problem, chunks don’t depend on anything or connect to anything (the way TVs do). I would backup the htmlsnippets table first though, just in case something turns up later.