Hello David,
First of all, make sure that you have your gallery call with the album name.
[[!Gallery? &album=`My Album`]]
I usually have the album name be a template variable where the admin writes in the name of the album that they created.
is the placeholder for the large image in the gallery
This code is for your thumbnails:
[[!+galitem.image:notempty=`
<div class="image">
<a href="[[+galitem.image]]"><img class="[[+galitem.imgCls]]" src="[[+galitem.image]]" alt="[[+galitem.name]]" /></a>
</div>
`]]
To determine which image is the first image, you just go into your Gallery component. Then right click on your album to open it. Then you should get a list of images. You can just select images and slide them around to the positions that you want. Make sure to save your changes.
Now as far as the pagination goes...I can't answer that one because when I used this add-on, I used it with the Galleriffic plugin. This plugin takes care of the pagination through javascript and does it automatically.